Estuary

A rehabilitation manual for Australian streams: volume 2

The second volume of a two part manual designed for managers involved in the rehabilitation of biological and physical conditions in Australian streams and rivers, provides more detailed information on tools that can be used in rehabilitation works. The volume is divided into three sections: common stream problems, planning tools and intervention tools. Specific areas covered include: geomorphic problems, water quality problems, other biological problems, natural channel design, evaluation tools, planning tools, intervention in the channel, and intervention in the riparian zone. Issues such as soil erosion, water supply, and flooding are addressed only in the context of rehabilitation work (A).

Why do fish need to cross the road: fish passage requirements for waterway crossings

This document aims to minimise impacts on fish passage and general aquatic wildlife by providing practical guidelines to those involved in the planning, design, construction and maintenance of waterway crossings. Considerable effort has been taken to make these guidelines applicable across Australia; however, local knowledge, data and experience should always be used to enhance, modify or even replace the information presented within these guidelines. Your local fisheries department/authority can provide additional information on fish species, design or approval requirements relevant to your area.

Understanding blue green algae blooms in Myall Lakes NSW

Myall Lakes is one of the largest coastal lake systems in New South Wales boasting over ten
thousand hectares of waterways set wholly within the Myall Lakes National Park. The Myall
Lakes system comprises a series of lakes including the Bombah Broadwater (lower lake),
Two Mile and Boolambayte Lakes (mid-lakes) and Myall Lake (upper lake). Feeding this lake
system is a catchment area of 78,000 hectares. The Myall and Crawford rivers are the main
tributaries to the lake system, feeding into Bombah Broadwater, while Boolambayte Creek
also supplies fresh water. The Lower Myall River connects this unique waterbody to the
ocean, allowing saltwater exchange from Port Stephens. Myall Lakes has significant
environmental and cultural value to the local, national and international community. The lake
system is recognised internationally under the Ramsar Convention as an important wetland,
and Myall Lakes National Park is a popular tourist destination for camping, bushwalking,
fishing, boating and water sports. A healthy lake system is integral to the culture and
economy of the local area.
In early 1999 Myall Lakes began to exhibit major signs of a natural system in trouble when a
large, toxic blue-green algae bloom formed in the lower section of the lakes. Blue-green algae
are a type of bacteria that act like plants by using light for photosynthesis. When conditions
are ideal they can multiply at a prolific rate resulting in a bloom. Potentially harmful algal
scums accumulated on the shores of the lake including at many popular camping areas. The
bloom persisted on-and-off until April 2001 having a major impact on the local community –
tourist numbers dropped and the lakes were intermittently closed to commercial and
recreational fishing. Blue-green algal blooms have continued to occur in the lakes since mid
2001, although not as severely as those experienced in 1999.
The initial algal bloom in 1999 left the Myall Lakes community extremely concerned about
the future of their unique natural asset. The State Government responded to these concerns by
initiating the ‘Monitoring Blue-Green Algae in Myall Lakes’ project - a partnership between
the then Department of Land and Water Conservation (DLWC; now Department of
Infrastructure, Planning, and Natural Resources [DIPNR]) and the NSW National Parks and
Wildlife Service (NPWS: now part of the Department of Environment and Conservation
[DEC]) with funding from the Federal Government’s Coasts and Clean Seas program.

The NSW wetlands management policy

As one of the component policies of the New South Wales State Rivers and Estuaries Policy, the Wetlands Management Policy provides guidance on wise use, best management practice and rehabilitation of wetlands. By adopting the policy, the State Government will give explicit consideration to the biophysical requirements of wetlands to ensure their sustainable management. Principles to be followed include formal recognition in water allocation and management plans of environmental water regimes for wetlands, encouragement of land uses that maintain wetland habitats and processes, discouragement of purpose built wetlands on the site of viable natural ones and the active rehabilitation of degraded wetlands and their habitats. Implementation of the policy will require application to Government agency's activities, coordination of the wetland work of Government agencies, provision of support to the community and preparation of an annual Wetland Action Plan (A).

Managing high in-stream temperatures using riparian vegetation

Research has shown that in-stream water temperatures control ecological processes and directly regulate biodiversity when upper lethal temperature limits of aquatic fauna are exceeded. In-stream water temperatures can be controlled by adequate riparian shading, which may also have flow-on improvements to lower river systems and estuaries. Controlling in-stream water temperature through riparian revegetation is one area of riparian restoration where target values can be easily set and where the amount of vegetation required to meet those targets can be specified. This technical guideline explores the ecological impacts of high water temperatures, particularly for ecosystem processing and aquatic fauna biodiversity, and provides guidance on identifying appropriate targets for riparian shading. A simple step-by-step method for determining relative priorities at the sub-catchment or catchment scale is described (A).

Relationships between riverine fish and woody debris: implications for lowland rivers

This paper reviews studies of relationships between riverine fish and woody debris at micro andmeso-habitat scales, and discusses the potential functions of instream structure for lowland river fish.

Experimental research, mainly in North America, has identified three main functions of woody debris as microhabitat for fish in upland streams: overhead cover that decreases predation risk both vertically and horizontally; horizontal visual isolation that reduces contact between fish; and velocity refuge which minimizes energetic costs. As with habitat features in other aquatic environments, increasing spatial complexity of woody debris may modify predator–prey interactions and provide greater surface areas for the growth of prey items. Woody debris may also provide spatial reference points for riverine fish to assist them in orienting within their surroundings. Lowland rivers differ from upland streams in terms of a number of physical variables, including turbidity, depth and water turbulence. Relationships between fish and woody debris in lowland rivers are likely to rely on mechanisms different to those in upland streams.

Recent initiatives involving the reintroduction of woody debris into previously cleared lowland rivers toeplace lost fish habitat are a positive development for lowland river restoration. However, if woody debris reintroduction is to maximally benefit lowland river fisheries, there is a requirement for better understanding of the ecological functions of woody debris in lowland rivers.

Eradicating and preventing the spread of the invasive alga Caulerpa taxifolia in NSW

This joint project between NSW Fisheries and the University of Wollongong had 3 objectives:
1 To investigate patterns of dispersal, recruitment and growth of the invasive alga Caulerpa taxifolia and provide information on spread within NSW estuaries
2 To investigate the vectors that may transfer C. taxifolia to new locations
3 To develop environmentally benign ways of removing C. taxifolia which might eventually lead to its elimination from whole sites or regions

The research undertaken to address these objectives provided a good understanding of the population ecology of C. taxifolia in NSW estuaries, allowed the evaluation of several control techniques and underpinned the development of a ‘Control Plan for Caulerpa taxifolia in NSW’ based on a preliminary assessment of risks. The control plan can be found at http://www.fisheries.nsw.gov.au/thr/species/fn-caulerpa.htm

To date, C. taxifolia has been found in 9 separate locations. All are estuaries or sheltered embayments and the seaweed has not yet been found on exposed coasts. It occurs in water 0.5–10 metres deep. C. taxifolia is capable of growing extremely quickly; stolons can extend by up to 13 mm per day in optimal conditions. Vegetative growth is the primary means by which the alga has invaded these NSW waterways, covering over a total of 4-8 km2 by mid 2004. C. taxifolia reproduces asexually through a process of fragmentation, dispersal and eventual anchoring of drifting fragments which are negatively buoyant and move across the seafloor in bottom currents. Large numbers of fragments were found within existing beds of C. taxifolia, and experiments showed that they could be trapped within seagrass beds or other structures on the seafloor. Once trapped, even small fragments can attach to the seafloor and grow into new plants. Infestations of C. taxifolia in NSW range from sparse distributions of scattered runners to dense beds 40 cm thick. Several other marine organisms may occur within beds of C. taxifolia, but most herbivorous species avoid eating it. Only two species of opisthobranch molluscs appear to readily feed on it.
A boat-mounted mapping system was developed to document the extent and spread of C. taxifolia in NSW waterways. A procedure whereby all known infestations are comprehensively mapped twice a year, in mid summer and in mid winter, has now been implemented. This mapping has accurately documented the continued spread of C. taxifolia in most of the estuaries where it occurred at the start of the project. Large-scale die-offs, however, occur in shallow water (0.5–2 m) in most waterways in NSW during winter and this was particularly evident after heavy rainfall. This die-back may be a consequence of decreased temperature, decreased salinity, increased turbidity or some combination of these.

There are several natural vectors that aid the fragmentation and translocation of C. taxifolia; storms, and the increased wave action associated with them, were found to be particularly important. These vectors become increasingly significant as the amount of C. taxifolia at a site expands, and they probably overshadow human-mediated vectors when infestations cover large areas such as in Lake Conjola and Botany Bay. Commercial activities on waterways infested by C. taxifolia such as commercial fishing, aquaculture, dredging or the building/maintenance of foreshore structures such as wharves, jetties or boat ramps can potentially cause increased fragmentation. Most such activities are now banned or strictly controlled at sites with C. taxifolia. Many human leisure activities may also generate, trap and transport fragments of C. taxifolia, including passive pursuits such as swimming, diving and more active pursuits such as boating, water skiing, anchoring or recreational fishing. Abundances of fragments were higher in areas of human use, and experiments showed that boat anchors, in particular, were readily able to remove significant amounts of the seaweed from beds of C. taxifolia. Additional experiments showed that
fragments caught this way could survive for 1-2 days out of water in conditions that mimicked the anchor well on a small boat and might constitute a major risk for transferral to other waterways.

Removing C. taxifolia by either hand-picking or using underwater suction devices was found to be effective for very small patches at shallow sites with sandy bottoms and good underwater visibility. Many of the infested waterways in NSW, however, are muddy and often turbid, making detection of all plants difficult and increasing the risk of accidentally releasing fragments. A scoping exercise was done for using a commercial dredging vessel to remove large areas of the seaweed, but the logistics proved too difficult. Experiments with various types of smothering materials, particularly jute matting, were also reasonably effective at killing most C. taxifolia in small-scale trials. Their use for areas larger than a few hundred square metres, however, created more difficulties than they provided solutions.

The use of osmotic shock showed the most promise in preliminary trials. The addition of a layer of salt directly onto the plants killed them within hours. Trials using salt delivered from a specially designed punt were very successful at scales of several hundred square metres, but results of larger scale salting were mixed. For example, single applications of salt to numerous outbreaks at one location resulted in the apparent removal of almost 5200 m2 of C. taxifolia, whereas repeated salting of a 3000 m2 infestation at another site led to a considerable reduction in the density of C. taxifolia, but no overall change to the extent of the infestation. Salt rapidly dissolves in seawater and therefore has little residual impact on the marine environment. Although salt may kill other marine organisms directly covered by it, experiments showed that the seagrass, Zostera marina, and invertebrate infauna which often co-occur with C. taxifolia, recover after 6 months if salt is applied at 50 kg salt per square metre. The use of this salting technique has now been adopted as a major component of the NSW Caulerpa Control Plan for the targeted control of new outbreaks or high risk infestations.

Because there is now more C. taxifolia in NSW waterways than can be effectively treated with salt, eradication does not seem feasible at this time. It is hoped, however, that the control procedures outlined in this report and in the NSW Caulerpa Control Plan will prevent the spread of the alga to locations where it is not currently found. A better understanding of the biology and patch dynamics of C. taxifolia will also assist in minimizing its impact on native biodiversity and the sustainable use of marine resources in NSW estuaries.

Controlling nuisance aquatic plants

Practical, on-ground approaches and techniques for managing nuisance aquatic plants are provided. The critical considerations in determining an effective management approach include: technique used for control (including the long term costs and benefits of mechanical excavations, herbicides, and shade), stream order, stream orientation, geographic location, species, width of riparian vegetation zone, nutrient input, and flow modifications. Each is considered in relation to appropriate strategies (A).

Temperature and light

Riparian vegetation has an important role in controlling stream temperature and light and thus influencing primary production within the stream channel, and the growth and development of aquatic plants and animals. The biological and physical processes involved are briefly discussed with an overview of current research into the role of riparian vegetation in maintaining stream health. The implications for effective stream management are canvassed and it is stressed that controlling the light and temperature environment is an important consideration in riparian management (A).

Australian wetland plants and wetlands in the landscape: Conservation of diversity and future management

The plant communities that are a feature of Australian shallow wetlands reflect the dynamics of their flooding and drying patterns. Anthropogenic changes to wetlands at individual wetland, catchment and landscape scales can change availability of plant habitats and hence the diversity of wetland plants. Policies for conservation of wetlands and the need for integrating policy, management and science in their implementation are addressed as a way forward for conservation. The natural dynamics of wetland plants and wetlands in the landscape are discussed and their resilience considered as an indicator of response to change. Plant community responses to induced change from alteration of water quantity and delivery (timing, frequency, duration and variability of flooding and drying), water quality, invasions and grazing are demonstrated. The responses of wetland plants, communities and wetlands to different flooding and drying patterns from field observation, experimental testing in glasshouse, outdoor tank trials, field scale experimental wetlands and field manipulations are presented to show how research can form the basis of extrapolation and generalization which can be used for prediction of change. The maintenance of mosaics of wetlands is suggested as a way of conserving biodiversity and enhancing resilience of wetlands in the landscape. The need for collaboration between researchers and conservators to establish principles of precautionary management is proposed.